‘Too early to tell’: Local infectious disease experts discuss new omicron coronavirus variant


ROCHESTER, N.Y. (WROC) — There are new warnings about a new and highly transmissible coronavirus variant known as “omicron,” which has not yet been detected in New York.

To discuss this new variant, local infectious disease experts hosted separate coronavirus press briefings Monday morning, including Dr. Emil Lesho from Rochester Regional Health and Dr. Ann Falsey, Dr. Angela Branche, and Dr. David Dobrzynski of URMC.

All the doctors agreed that it’s too soon for any sweeping declarations regarding the new variant.

“There’s a lot that we don’t know, and some of what I may say today could change tomorrow,” Dr. Lesho said.

“This variant was only detected on November 9, so there are a lot of things we do not know yet,” Dr. Falsey said. “We need a little bit more time to understand the epidemiology.”

“It’s going to take weeks, maybe months, to understand the disease severity,” Dr. Branche said.

“It’s a little too early to tell,” Dr. Lesho said. “These mutations happen on a regular basis. They look concerning at first , and kind of fizzle. We might see that happen with omicron. It could be the same as delta, or worse, and that could undo our progress.

Dr. Lesho said the primary concern of health experts right now is that current COVID-19 vaccines will not protect people from this new variant, but he added that until more information is available, vaccination and booster shots remain as the best tools for people to remain safe amid the pandemic.

“Still the best line of defense,” Dr. Lesho said. “There’s sill a lot of people unvaccinated in the U.S. The way to stop these new variants from emerging is getting as many people vaccinated as possible.”

“What we have found with the variants is the more the better,” Dr. Falsey said when discussing keeping up with vaccines and boosters.

URMC press conference

The doctors said Monroe County would likely have more information soon on the increased availability of testing, and guides for what do if someone tests positive for omicron.

North America’s first confirmed omicron cases were announced in Canada Sunday. As of Monday morning, there have been no omicron cases confirmed in New York or the U.S.

Nations around the world sought to keep the new omicron variant at bay with travel bans and further restrictions, even as it remains unclear what it means for the COVID-19 pandemic. Japan announced Monday it would suspend entry of all foreign visitors.

New cases of the variant identified days ago by researchers in South Africa appeared as far apart as Hong Kong, Australia and Portugal. Portuguese authorities were investigating whether some of the infections there could be among the first reported cases of local transmission of the variant outside of southern Africa.

The stream of new cases showed the near impossibility of keeping the genie in the bottle in a globalized world of travel and open borders.

Gov. Kathy Hochul announced an executive order Friday aimed at boosting hospital capacity ahead of a potential winter spike in COVID-19 cases.


Health Minister Joe Phaahla said the variant was linked to an “exponential rise” of cases in the last few days.

From just over 200 new confirmed cases per day in recent weeks, South Africa saw the number of new daily cases rocket to more than 3,200 Saturday, most in Gauteng.

Struggling to explain the sudden rise in cases, scientists studied virus samples and discovered the new variant. Now, as many as 90% of the new cases in Gauteng are caused by it, according to Tulio de Oliveira, director of the KwaZulu-Natal Research Innovation and Sequencing Platform.


After convening a group of experts to assess the data, the WHO said that “preliminary evidence suggests an increased risk of reinfection with this variant,” as compared to other variants.

That means people who contracted COVID-19 and recovered could be subject to catching it again.

The variant appears to have a high number of mutations — about 30 — in the coronavirus’ spike protein, which could affect how easily it spreads to people.

Sharon Peacock, who has led genetic sequencing of COVID-19 in Britain at the University of Cambridge, said the data so far suggest the new variant has mutations “consistent with enhanced transmissibility,” but said that “the significance of many of the mutations is still not known.”

Lawrence Young, a virologist at the University of Warwick, described omicron as “the most heavily mutated version of the virus we have seen,” including potentially worrying changes never before seen all in the same virus.


Scientists know that omicron is genetically distinct from previous variants including the beta and delta variants, but do not know if these genetic changes make it any more transmissible or dangerous. So far, there is no indication the variant causes more severe disease.

It will likely take weeks to sort out if omicron is more infectious and if vaccines are still effective against it.

Peter Openshaw, a professor of experimental medicine at Imperial College London said it was “extremely unlikely” that current vaccines wouldn’t work, noting they are effective against numerous other variants.

Even though some of the genetic changes in omicron appear worrying, it’s still unclear if they will pose a public health threat. Some previous variants, like the beta variant, initially alarmed scientists but didn’t end up spreading very far.

“We don’t know if this new variant could get a toehold in regions where delta is,” said Peacock of the University of Cambridge. “The jury is out on how well this variant will do where there are other variants circulating.”

To date, delta is by far the most predominant form of COVID-19, accounting for more than 99% of sequences submitted to the world’s biggest public database.


The coronavirus mutates as it spreads and many new variants, including those with worrying genetic changes, often just die out. Scientists monitor COVID-19 sequences for mutations that could make the disease more transmissible or deadly, but they cannot determine that simply by looking at the virus.

Peacock said the variant “may have evolved in someone who was infected but could then not clear the virus, giving the virus the chance to genetically evolve,” in a scenario similar to how experts think the alpha variant — which was first identified in England — also emerged, by mutating in an immune-compromised person.



Israel is banning foreigners from entering the county and Morocco has stopped all incoming international air travel.

A number of other countries are restricting flights in from southern Africa.

Given the recent rapid rise in COVID-19 in South Africa, restricting travel from the region is “prudent” and would buy authorities more time, said Neil Ferguson, an infectious diseases expert at Imperial College London.

But the WHO noted that such restrictions are often limited in their effect and urged countries to keep borders open.

Jeffrey Barrett, director of COVID-19 Genetics at the Wellcome Sanger Institute, thought that the early detection of the new variant could mean restrictions taken now would have a bigger impact than when the delta variant first emerged

“With delta, it took many, many weeks into India’s terrible wave before it became clear what was going on and delta had already seeded itself in many places in the world and it was too late to do anything about it,” he said. “We may be at an earlier point with this new variant so there may still be time to do something about it.”

South Africa’s government said the country was being treated unfairly because it has advanced genomic sequencing and could detect the variant quicker and asked other countries to reconsider the travel bans.

Watch the full briefing

Check back with News 8 WROC as we will continue to update this developing story.

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